gp41-M-MAT, a membrane associated MPER trimer from HIV-1 gp41
Organism: Human immunodeficiency virus type 1
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam ID: PF00517
PDB code: 2LP7
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.5 Å
Number of TM segments = 3
Sequence positions:
A: 42-58
C: 43-58
B: 42-58
Tilt angles:
A - Segment: 42-58 - Tilt: 36.9°
C - Segment: 43-58 - Tilt: 26.3°
B - Segment: 42-58 - Tilt: 39.4°
Structural assessment:
MAIDEN score = -8.7512
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]
Modified weights in the OREMPRO scale:
Gly=0.01; His=0.01; Trp=0.01; Tyr=0.01