GlpG, a Rhomboid family intramembrane protease
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01694
PDB ID: 2NRF
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 10
Sequence positions:
A: 6-21|45-68|84-98|108-119
B: 191-208|225-250|266-278|289-305|319-332|334-350
Tilt angles:
A - Segment: 6-21 - Tilt: 26.2°
A - Segment: 45-68 - Tilt: 50.1°
A - Segment: 84-98 - Tilt: 26.1°
A - Segment: 108-119 - Tilt: 35.4°
B - Segment: 191-208 - Tilt: 22.4°
B - Segment: 225-250 - Tilt: 57.8°
B - Segment: 266-278 - Tilt: 6.1°
B - Segment: 289-305 - Tilt: 52.3°
B - Segment: 319-332 - Tilt: 24.1°
B - Segment: 334-350 - Tilt: 41.9°
Structural assessment:
MAIDEN score = -65.5649
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]