Opca adhesion from Neisseria meningitidis determined by crystallization from the cubic mesophase
Organism: Neisseria meningitidis
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF07239
PDB ID: 2VDF
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.6 Å
Number of TM segments = 6
Sequence positions:
A: 35-42|50-57|89-95|113-119|133-140|148-171
Tilt angles:
A - Segment: 35-42 - Tilt: 39.9°
A - Segment: 50-57 - Tilt: 31.8°
A - Segment: 89-95 - Tilt: 26.9°
A - Segment: 113-119 - Tilt: 26.4°
A - Segment: 133-140 - Tilt: 33.1°
A - Segment: 148-171 - Tilt: 64.9°
Structural assessment:
MAIDEN score = -2.8635
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]