SecYE translocon from Thermus thermophilus with a Fab fragment
Organism: Thermus thermophilus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 2ZJS
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 11
Sequence positions:
Y: 19-36|70-87|116-130|154-172|183-198|218-234|270-287|311-324|369-383|394-409
E: 27-55
Tilt angles:
Y - Segment: 19-36 - Tilt: 45.8°
Y - Segment: 70-87 - Tilt: 37.7°
Y - Segment: 116-130 - Tilt: 8.7°
Y - Segment: 154-172 - Tilt: 44.5°
Y - Segment: 183-198 - Tilt: 31.2°
Y - Segment: 218-234 - Tilt: 29.8°
Y - Segment: 270-287 - Tilt: 46.5°
Y - Segment: 311-324 - Tilt: 13.8°
Y - Segment: 369-383 - Tilt: 27.9°
Y - Segment: 394-409 - Tilt: 16.8°
E - Segment: 27-55 - Tilt: 63.6°
Structural assessment:
MAIDEN score = -96.8610
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]