Mouse VDAC1 at 2.3 Å resolution
Organism: Mus musculus
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF01459
PDB ID: 3EMN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 19
Sequence positions:
X: 5-24|26-33|39-46|56-62|69-76|81-87|96-102|111-118|124-131|136-144|150-157|166-173|179-187|189-196|202-210|218-227|231-239|242-252|254-262
Tilt angles:
X - Segment: 5-24 - Tilt: 52.8°
X - Segment: 26-33 - Tilt: 35.7°
X - Segment: 39-46 - Tilt: 39.3°
X - Segment: 56-62 - Tilt: 34.9°
X - Segment: 69-76 - Tilt: 32.7°
X - Segment: 81-87 - Tilt: 32.4°
X - Segment: 96-102 - Tilt: 30.7°
X - Segment: 111-118 - Tilt: 32.1°
X - Segment: 124-131 - Tilt: 38.2°
X - Segment: 136-144 - Tilt: 41.3°
X - Segment: 150-157 - Tilt: 39.6°
X - Segment: 166-173 - Tilt: 34.4°
X - Segment: 179-187 - Tilt: 35.4°
X - Segment: 189-196 - Tilt: 33.8°
X - Segment: 202-210 - Tilt: 39.5°
X - Segment: 218-227 - Tilt: 44.6°
X - Segment: 231-239 - Tilt: 47.1°
X - Segment: 242-252 - Tilt: 49.3°
X - Segment: 254-262 - Tilt: 42.2°
Structural assessment:
MAIDEN score = -30.2437
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]