Alpha-1 glycine receptor by single particle electron cryo-microscopy, glycine-bound state
Organism: Danio rerio
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02932
PDB ID: 3JAE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.4 Å
Number of TM segments = 20
Sequence positions:
A: 215-233|243-262|272-292|316-337
C: 891-910|919-937|951-970|991-1009
B: 551-571|581-600|611-630|654-675
E: 1568-1586|1594-1613|1626-1645|1667-1685
D: 1230-1249|1256-1275|1289-1308|1328-1347
Tilt angles:
A - Segment: 215-233 - Tilt: 7.6°
A - Segment: 243-262 - Tilt: 16.3°
A - Segment: 272-292 - Tilt: 15.5°
A - Segment: 316-337 - Tilt: 21.0°
C - Segment: 891-910 - Tilt: 10.9°
C - Segment: 919-937 - Tilt: 5.0°
C - Segment: 951-970 - Tilt: 19.4°
C - Segment: 991-1009 - Tilt: 14.5°
B - Segment: 551-571 - Tilt: 18.6°
B - Segment: 581-600 - Tilt: 12.7°
B - Segment: 611-630 - Tilt: 11.0°
B - Segment: 654-675 - Tilt: 22.6°
E - Segment: 1568-1586 - Tilt: 6.3°
E - Segment: 1594-1613 - Tilt: 8.6°
E - Segment: 1626-1645 - Tilt: 13.8°
E - Segment: 1667-1685 - Tilt: 11.3°
D - Segment: 1230-1249 - Tilt: 5.4°
D - Segment: 1256-1275 - Tilt: 3.6°
D - Segment: 1289-1308 - Tilt: 14.3°
D - Segment: 1328-1347 - Tilt: 10.7°
Structural assessment:
MAIDEN score = -120.7665
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]