Sodium/Calcium Exchanger from Methanocaldococcus jannaschii DSM 2661
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01699
PDB ID: 3V5U
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.0 Å
Number of TM segments = 10
Sequence positions:
A: 7-24|42-59|73-93|105-120|123-139|169-183|206-222|229-250|260-275|280-295
Tilt angles:
A - Segment: 7-24 - Tilt: 33.4°
A - Segment: 42-59 - Tilt: 30.7°
A - Segment: 73-93 - Tilt: 40.1°
A - Segment: 105-120 - Tilt: 26.6°
A - Segment: 123-139 - Tilt: 20.2°
A - Segment: 169-183 - Tilt: 23.5°
A - Segment: 206-222 - Tilt: 35.3°
A - Segment: 229-250 - Tilt: 53.1°
A - Segment: 260-275 - Tilt: 17.2°
A - Segment: 280-295 - Tilt: 7.2°
Structural assessment:
MAIDEN score = -101.9125
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]