Sodium/Calcium Exchanger from Methanocaldococcus jannaschii DSM 2661
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01699
PDB ID: 3V5U
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 10
Sequence positions:
A: 10-27|39-54|74-92|104-118|127-143|155-172|199-214|221-237|251-266|275-290
Tilt angles:
A - Segment: 10-27 - Tilt: 44.5°
A - Segment: 39-54 - Tilt: 2.8°
A - Segment: 74-92 - Tilt: 38.1°
A - Segment: 104-118 - Tilt: 26.2°
A - Segment: 127-143 - Tilt: 29.1°
A - Segment: 155-172 - Tilt: 44.3°
A - Segment: 199-214 - Tilt: 19.4°
A - Segment: 221-237 - Tilt: 25.2°
A - Segment: 251-266 - Tilt: 9.5°
A - Segment: 275-290 - Tilt: 12.7°
Structural assessment:
MAIDEN score = -58.5792
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]