Open Channel Conformation of a Voltage Gated Sodium Channel
Organism: Magnetococcus marinus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00520
PDB ID: 4F4L
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.1 Å
Number of TM segments = 5
Sequence positions:
A: 71-92
C: 5-24|71-92
B: 71-93
D: 71-93
Tilt angles:
A - Segment: 71-92 - Tilt: 40.7°
C - Segment: 5-24 - Tilt: 21.9°
C - Segment: 71-92 - Tilt: 39.6°
B - Segment: 71-93 - Tilt: 38.7°
D - Segment: 71-93 - Tilt: 39.1°
Structural assessment:
MAIDEN score = -60.7314
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]