The resting-state conformation of the GLIC ligand-gated ion channel
Organism: Gloeobacter violaceus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02932
PDB ID: 4NPQ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 35.4 Å
Number of TM segments = 16
Sequence positions:
A: 192-214|216-239|249-272
C: 812-836|838-861|871-894
B: 502-525|527-550|560-584|597-620
E: 1435-1458|1460-1483|1492-1515
D: 1123-1147|1149-1172|1181-1204
Tilt angles:
A - Segment: 192-214 - Tilt: 17.3°
A - Segment: 216-239 - Tilt: 1.8°
A - Segment: 249-272 - Tilt: 9.5°
C - Segment: 812-836 - Tilt: 22.9°
C - Segment: 838-861 - Tilt: 5.8°
C - Segment: 871-894 - Tilt: 13.4°
B - Segment: 502-525 - Tilt: 23.6°
B - Segment: 527-550 - Tilt: 4.3°
B - Segment: 560-584 - Tilt: 14.0°
B - Segment: 597-620 - Tilt: 11.4°
E - Segment: 1435-1458 - Tilt: 21.7°
E - Segment: 1460-1483 - Tilt: 2.1°
E - Segment: 1492-1515 - Tilt: 13.4°
D - Segment: 1123-1147 - Tilt: 22.9°
D - Segment: 1149-1172 - Tilt: 4.9°
D - Segment: 1181-1204 - Tilt: 14.9°
Structural assessment:
MAIDEN score = -295.1747
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]