Full-length AMPA subtype ionotropic glutamate receptor GluA2 in complex with partial agonist kainate
Organism: Rattus norvegicus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00060
PDB ID: 4U2Q
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.9 Å
Number of TM segments = 11
Sequence positions:
A: 524-542|596-613|795-812
C: 525-543|795-812
B: 526-543|595-613|794-810
D: 526-542|596-613|796-812
Tilt angles:
A - Segment: 524-542 - Tilt: 20.5°
A - Segment: 596-613 - Tilt: 31.8°
A - Segment: 795-812 - Tilt: 22.1°
C - Segment: 525-543 - Tilt: 26.6°
C - Segment: 795-812 - Tilt: 30.2°
B - Segment: 526-543 - Tilt: 31.1°
B - Segment: 595-613 - Tilt: 27.2°
B - Segment: 794-810 - Tilt: 5.3°
D - Segment: 526-542 - Tilt: 21.6°
D - Segment: 596-613 - Tilt: 31.8°
D - Segment: 796-812 - Tilt: 29.5°
Structural assessment:
MAIDEN score = -125.5729
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]