Precise Resting State of Thermus thermophilus SecYEG
Organism: Thermus thermophilus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 5AWW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.9 Å
Number of TM segments = 13
Sequence positions:
Y: 18-35|69-101|107-127|157-176|179-205|214-235|266-283|311-330|364-386|391-411
E: 454-483
G: 491-512|534-553
Tilt angles:
Y - Segment: 18-35 - Tilt: 23.8°
Y - Segment: 69-101 - Tilt: 47.6°
Y - Segment: 107-127 - Tilt: 27.3°
Y - Segment: 157-176 - Tilt: 23.0°
Y - Segment: 179-205 - Tilt: 43.4°
Y - Segment: 214-235 - Tilt: 43.0°
Y - Segment: 266-283 - Tilt: 36.9°
Y - Segment: 311-330 - Tilt: 16.1°
Y - Segment: 364-386 - Tilt: 41.7°
Y - Segment: 391-411 - Tilt: 26.8°
E - Segment: 454-483 - Tilt: 55.3°
G - Segment: 491-512 - Tilt: 42.2°
G - Segment: 534-553 - Tilt: 15.8°
Structural assessment:
MAIDEN score = -77.0508
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]