Peptide-Bound State of Thermus thermophilus SecYEG
Organism: Thermus thermophilus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 5CH4
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 30.6 Å
Number of TM segments = 11
Sequence positions:
Y: 19-39|51-87|114-135|151-175|183-208|211-231|271-292|296-322
E: 34-59
G: 3-25|52-72
Tilt angles:
Y - Segment: 19-39 - Tilt: 33.7°
Y - Segment: 51-87 - Tilt: 33.1°
Y - Segment: 114-135 - Tilt: 14.4°
Y - Segment: 151-175 - Tilt: 38.3°
Y - Segment: 183-208 - Tilt: 47.1°
Y - Segment: 211-231 - Tilt: 17.0°
Y - Segment: 271-292 - Tilt: 22.9°
Y - Segment: 296-322 - Tilt: 18.8°
E - Segment: 34-59 - Tilt: 44.4°
G - Segment: 3-25 - Tilt: 23.9°
G - Segment: 52-72 - Tilt: 11.4°
Structural assessment:
MAIDEN score = -116.6507
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]