Transmembrane glycoprotein 40
Organism: Simian immunodeficiency virus
Model: Theoretical ModBase
Representation: Atomistic
Type: α-helical
UniProtKB AC: Q87978
Pfam Acc: PF00517
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 2
Sequence positions:
: 50-77|115-137
Tilt angles:
- Segment: 50-77 - Tilt: 64.5°
- Segment: 115-137 - Tilt: 59.8°
Structural assessment:
MAIDEN score = -19.2117
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]