Pre-mRNA-processing-splicing factor 8 (PRPF8)

The protein contains 2335 amino acids for an estimated molecular weight of 273600 Da.

 

Plays role in pre-mRNA splicing as core component of precatalytic, catalytic and postcatalytic spliceosomal complexes, both of the predominant U2-type spliceosome and the minor U12-type spliceosome (PubMed:10411133, PubMed:11971955, PubMed:28502770, PubMed:28781166, PubMed:28076346, PubMed:29361316, PubMed:30315277, PubMed:29360106, PubMed:29301961, PubMed:30728453, PubMed:30705154). Functions as a scaffold that mediates the ordered assembly of spliceosomal proteins and snRNAs. Required for the assembly of the U4/U6-U5 tri-snRNP complex, a building block of the spliceosome. Functions as scaffold that positions spliceosomal U2, U5 and U6 snRNAs at splice sites on pre-mRNA substrates, so that splicing can occur. Interacts with both the 5' and the 3' splice site. (updated: July 3, 2019)

Protein identification was indicated in the following studies:

  1. D'Alessandro and co-workers. (2017) Red blood cell proteomics update: is there more to discover? Blood Transfus. 15(2), 182-187.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

Interpro domains
Total structural coverage: 0%
Model score: 0
No model available.

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VariantDescription
dbSNP:rs1043391
dbSNP:rs11559304
dbSNP:rs1043396
dbSNP:rs1043399
RP13
RP13
RP13
RP13
RP13; reduces interaction with SNRNP200 and EFTUD2
RP13
RP13; reduces interaction with EFTUD2, but not with SNRNP200
RP13

The reference OMIM entry for this protein is 600059

Retinitis pigmentosa 13; rp13

A number sign (#) is used with this entry due to evidence that this form of retinitis pigmentosa, designated RP13, is caused by mutations in the PRPF8 gene (607300). For a phenotypic description and a discussion of genetic heterogeneity of retinitis pigmentosa, see 268000.

CLINICAL FEATURES

The family with autosomal dominant retinitis pigmentosa (adRP) studied by Greenberg et al. (1994) was of British stock. The great-grandfather came to South Africa from Suffolk, England, in the mid-1800s. The onset of night blindness was between 4 and 10 years of age. By middle age, some patients had diffuse fundal changes and extensive retinal degeneration. The changes were classic midequatorial pigmentation and constricted visual fields at an early age in many patients. The presentation was considered to be that of early-onset adRP with diffuse retinal involvement, i.e., type I(D). Maubaret et al. (2011) reported detailed genotype/phenotype correlation in 2 British autosomal dominant retinitis pigmentosa families with mutations in the PRPF8 gene. All affected members complained of nyctalopia with variable age of onset. In the first family, there was marked phenotypic variation, from severe rod-cone dystrophy to normal retinal appearance and mild rod dysfunction on scotopic electroretinography in a 67-year-old patient. The second family demonstrated similar variability and included a nonpenetrant individual.

MAPPING

Greenberg et al. (1994) provided definitive evidence for the localization of a gene for adRP, here symbolized RP13, on 17p by linkage analysis in a large South African kindred. The recoverin gene (RCV1; 179618) is located at 17p13.1. Although it was considered a prime candidate for adRP in the family studied, mutation screening of the 3 exons of this gene failed to reveal any mutation. Furthermore, Goliath et al. (1995) excluded linkage to the RCV1 gene because of recombination observed with an intragenic RCV1 marker described by Wiechmann et al. (1994). By further studies in the South African family originally described by Greenberg et al. (1994), Goliath et al. (1995) refined the localization of the RP13 gene in 17p13.1 to the interval between D17S1529 and D17S831. In a large 8-generation family of British descent living in the United States, Kojis et al. (1996) mapped the gene to the 17p13.3 region. Reanalysis of the South African family, in conjunction with the American data, suggested that only one autosomal dominant RP locus exists on 17p but that it maps to 17p13.3, a more telomeric position than previously reported. In an affected 3-generation family originating from South Cumbria, England, Tarttelin et al. (1996) confirmed the refinement data of Goliath et al. (1995).

MOLECULAR GENETICS

Using a positional cloning and candidate gene strategy, McKie et al. (2001) identified 7 different missense mutations in the PRPF8 splicing factor gene (607300) in autosomal dominant RP families. Three of the mutations cosegregated within 3 RP13 linked families, including the original large South African pedigree, and 4 additional mutations had been identified in other unrelated autosomal dominant RP families. The 7 mutations are clustered within a 14-codon stretch within the last exon of this large 7-kb transcript. The altered amino acid residues at the C-terminus exhibited a high degree of conservation across species as diverse as humans, Arabidopsis, and trypanosome, suggesting that some functional significance ... More on the omim web site

Subscribe to this protein entry history

July 4, 2019: Protein entry updated
Automatic update: Entry updated from uniprot information.

May 12, 2019: Protein entry updated
Automatic update: OMIM entry 600059 was added.

Oct. 19, 2018: Additional information
Initial protein addition to the database. This entry was referenced in Bryk and co-workers. (2017).