Protein Shroom3 (SHROOM3)

The protein contains 1996 amino acids for an estimated molecular weight of 216857 Da.

 

Controls cell shape changes in the neuroepithelium during neural tube closure. Induces apical constriction in epithelial cells by promoting the apical accumulation of F-actin and myosin II, and probably by bundling stress fibers (By similarity). Induces apicobasal cell elongation by redistributing gamma-tubulin and directing the assembly of robust apicobasal microtubule arrays (By similarity). (updated: Oct. 16, 2019)

Protein identification was indicated in the following studies:

  1. Goodman and co-workers. (2013) The proteomics and interactomics of human erythrocytes. Exp Biol Med (Maywood) 238(5), 509-518.
  2. Hegedűs and co-workers. (2015) Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications. Database (Oxford) 1-8.
  3. Bryk and co-workers. (2017) Quantitative Analysis of Human Red Blood Cell Proteome. J Proteome Res. 16(8), 2752-2761.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

This protein is annotated as membranous in UniProt.


Interpro domains
Total structural coverage: 6%
Model score: 0
No model available.

(right-click above to access to more options from the contextual menu)

VariantDescription
dbSNP:rs3821979
dbSNP:rs344140
dbSNP:rs344141
dbSNP:rs3733242

No binding partner found

The reference OMIM entry for this protein is 604570

Shroom family member 3; shroom3
Shroom, mouse, homolog of; shrm
Kiaa1481

CLONING

Using gene trap mutagenesis, Hildebrand and Soriano (1999) identified a mutation in mice that caused exencephaly, acrania, facial clefting, and spina bifida, all of which could be attributed to failed neural tube closure. This mutation was designated 'shroom' (shrm), because the neural folds 'mushroom' outward and do not converge at the dorsal midline. By 5-prime RACE and library screening, the cDNA for the trapped gene was cloned. Sequence analysis indicated there are at least 2 shrm transcripts that encode 2 different putative protein products. The longest predicted transcript, shrmL, encodes a protein of 1,986 amino acids, while the second transcript, shrmS, encodes a protein of 1,808 amino acids that lacks the N-terminal 177 amino acids of shrmL. Shrm is a PDZ domain-containing protein related to Xenopus Apx and human APXL (SHROOM2; 300103). By sequencing clones obtained from a size-fractionated fetal brain cDNA library, Nagase et al. (2000) cloned SHRM, which they designated KIAA1481. The deduced protein shares significant identity with human APXL. RT-PCR ELISA detected highest expression of SHRM in liver, followed by kidney, ovary, cerebellum, and spinal cord. Intermediate expression was found in all other tissues and brain regions examined except skeletal muscle, where there was little to no expression.

GENE FUNCTION

Hildebrand and Soriano (1999) found that Shrm is involved at several levels in regulating aspects of cytoarchitecture. First, endogenous shrm localized to adherens junctions and the cytoskeleton. Second, ectopically expressed Shrm altered the subcellular distribution of F-actin. Third, Shrm directly bound F-actin. Finally, cytoskeletal polarity within the neuroepithelium was perturbed in mutant embryos. In concert, these observations suggested that Shrm is a critical determinant of the cellular architecture required for proper neurulation. In experiments in Xenopus, Lee et al. (2007) showed that SHROOM3 is necessary and sufficient to induce a redistribution of the microtubule regulator gamma-tubulin (see 191135). They found that this change in gamma-tubulin distribution underlies the assembly of aligned arrays of microtubules that drive apicobasal cell elongation. They concluded that Shroom family proteins govern epithelial cell behaviors by coordinating the assembly of both microtubule and actin cytoskeletons. Hildebrand (2005) found that Shroom localized to the apical junctional complex in Madin-Darby canine kidney cells. Overexpression of Shroom resulted in altered cell morphology with apical constriction and altered apical cell-cell alignment. Targeting the C-terminal domain of Shroom to the apical plasma membrane produced similar changes. The neural epithelia of Schroom-mutant mouse embryos showed a marked reduction in the apical position of myosin IIB (MYH10; 160776), whereas the positions of nectin-3 (PVRL3; 607147) and Zo1 (TJP1; 601009) were unaltered. Hildebrand (2005) concluded that Shroom facilitates the subapical distribution of nonmuscle myosin IIB, which in turn regulates the tissue rigidity and cell shape changes required for neural tube closure.

MAPPING

By analyzing a human-rodent hybrid panel, Nagase et al. (2000) mapped the SHRM gene to chromosome 4. ... More on the omim web site

Subscribe to this protein entry history

Oct. 27, 2019: Protein entry updated
Automatic update: Entry updated from uniprot information.

Feb. 2, 2018: Protein entry updated
Automatic update: Uniprot description updated

Dec. 19, 2017: Protein entry updated
Automatic update: Uniprot description updated

March 16, 2016: Protein entry updated
Automatic update: OMIM entry 604570 was added.