Atlas of protein molecular dynamics
ATLAS gathers standardized molecular dynamics simulations of protein structures accompanied by their analysis in the form of interactive diagrams and trajectory visualisation. All the raw trajectories as well as the results of analysis are available for download. See an example →
Please cite:
Vander Meersche, Y., Cretin, G., Gheeraert, A., Gelly, J. C., & Galochkina, T. (2024). ATLAS: protein flexibility description from atomistic molecular dynamics simulations. Nucleic acids research, 52(D1), D384-D392.
doi:10.1093/nar/gkad1084
Data released under CC-BY-NC 4.0.
2026/06/04 — Fix: bulk download script (download_ATLAS.py) and the /api/parsable endpoint now return data correctly.
2026/05/06 — Fix: searching for terms containing special characters (e.g. Na⁺/K⁺-ATPase, ATP-synthase) no longer returns a server error
2026/05/05 — Fixed downloading plot as a png from Plotly plots
2026/04/01 — Fix: sorting columns now correctly sorts the whole table instead of the current page only.
2026/03/09 — Major search feature update: proteins are associated to their Uniprot page metadata and can therefore be queried according to those metadata
2025/11/21 — RMSF Data Fix: downloadable files now use Ångströms (Å) consistently.
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